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Sample GSM1505082 Query DataSets for GSM1505082
Status Public on Sep 17, 2014
Title SAT_105
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 34
bmi: 59.25925926
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.59033404
cg00001583 0.072774945
cg00002028 0.079484126
cg00002719 0.050903096
cg00002837 0.34987989
cg00003202 0.035662014
cg00003287 0.272501401
cg00007036 0.90962516
cg00007898 0.041989621
cg00008004 0.114197677
cg00008647 0.172532196
cg00009292 0.125192286
cg00011717 0.900198337
cg00014168 0.624912658
cg00015286 0.683394455
cg00016238 0.847278791
cg00017221 0.065064405
cg00017437 0.076025708
cg00021123 0.647708865
cg00021576 0.07200273

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505082_5822943029_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505082_5822943029_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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