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Sample GSM1505080 Query DataSets for GSM1505080
Status Public on Sep 17, 2014
Title SAT_42
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 50.53817368
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.757750755
cg00001583 0.077877284
cg00002028 0.08369749
cg00002719 0.180318128
cg00002837 0.333589987
cg00003202 0.063436108
cg00003287 0.239730107
cg00007036 0.947406598
cg00007898 0.06287728
cg00008004 0.086461738
cg00008647 0.090311927
cg00009292 0.133341536
cg00011717 0.904062294
cg00014168 0.642120803
cg00015286 0.723941587
cg00016238 0.871417711
cg00017221 0.070042347
cg00017437 0.058369054
cg00021123 0.710647172
cg00021576 0.066912844

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505080_5822943028_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505080_5822943028_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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