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Sample GSM1505079 Query DataSets for GSM1505079
Status Public on Sep 17, 2014
Title SAT_119
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 35
bmi: 30.69387755
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.712437906
cg00001583 0.060319206
cg00002028 0.079908678
cg00002719 0.077284857
cg00002837 0.280612908
cg00003202 0.036082564
cg00003287 0.234552282
cg00007036 0.936385052
cg00007898 0.057494647
cg00008004 0.09320381
cg00008647 0.109528406
cg00009292 0.120118228
cg00011717 0.908213802
cg00014168 0.556952627
cg00015286 0.701721962
cg00016238 0.831189425
cg00017221 0.055366499
cg00017437 0.068044103
cg00021123 0.56386128
cg00021576 0.069347531

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505079_5822943028_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505079_5822943028_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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