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Sample GSM1505078 Query DataSets for GSM1505078
Status Public on Sep 17, 2014
Title SAT_74
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 37
bmi: 53.50772889
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.733987316
cg00001583 0.081822029
cg00002028 0.08333354
cg00002719 0.108481067
cg00002837 0.316487765
cg00003202 0.041748408
cg00003287 0.243725512
cg00007036 0.914367789
cg00007898 0.02966004
cg00008004 0.076328272
cg00008647 0.130306711
cg00009292 0.124395627
cg00011717 0.901438846
cg00014168 0.661808938
cg00015286 0.651198283
cg00016238 0.828813648
cg00017221 0.054306495
cg00017437 0.06034004
cg00021123 0.686862449
cg00021576 0.067309929

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505078_5822943028_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505078_5822943028_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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