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Sample GSM1505077 Query DataSets for GSM1505077
Status Public on Sep 17, 2014
Title SAT_76
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 43
bmi: 40.51776686
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.804242299
cg00001583 0.068901732
cg00002028 0.068040325
cg00002719 0.237587275
cg00002837 0.205044994
cg00003202 0.057805443
cg00003287 0.152202016
cg00007036 0.946522456
cg00007898 0.054519764
cg00008004 0.146349753
cg00008647 0.079488604
cg00009292 0.133690434
cg00011717 0.926202353
cg00014168 0.773427086
cg00015286 0.760202072
cg00016238 0.851196306
cg00017221 0.065872574
cg00017437 0.048735123
cg00021123 0.74797639
cg00021576 0.068886751

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505077_5822943026_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505077_5822943026_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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