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Sample GSM1505076 Query DataSets for GSM1505076
Status Public on Sep 17, 2014
Title SAT_112
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 35.90650758
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.79974584
cg00001583 0.083069702
cg00002028 0.065452211
cg00002719 0.127518185
cg00002837 0.294900181
cg00003202 0.035012028
cg00003287 0.277581553
cg00007036 0.945187115
cg00007898 0.063597177
cg00008004 0.091654759
cg00008647 0.077080396
cg00009292 0.124495967
cg00011717 0.883488324
cg00014168 0.673307881
cg00015286 0.74408638
cg00016238 0.775956264
cg00017221 0.075484782
cg00017437 0.066419331
cg00021123 0.725626066
cg00021576 0.090152938

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505076_5822943026_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505076_5822943026_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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