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Sample GSM1505075 Query DataSets for GSM1505075
Status Public on Sep 17, 2014
Title SAT_92
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 39
bmi: 45.76442368
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.749303134
cg00001583 0.084563822
cg00002028 0.073393267
cg00002719 0.097389483
cg00002837 0.287642749
cg00003202 0.034341646
cg00003287 0.169159463
cg00007036 0.948470843
cg00007898 0.037061747
cg00008004 0.10318056
cg00008647 0.071628766
cg00009292 0.135900758
cg00011717 0.891001213
cg00014168 0.693101046
cg00015286 0.75410102
cg00016238 0.830999184
cg00017221 0.057113489
cg00017437 0.050023874
cg00021123 0.634669589
cg00021576 0.07410999

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505075_5822943026_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505075_5822943026_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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