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Sample GSM1505074 Query DataSets for GSM1505074
Status Public on Sep 17, 2014
Title SAT_83
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 36
bmi: 44.06677559
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.712545655
cg00001583 0.055790231
cg00002028 0.081053644
cg00002719 0.116316749
cg00002837 0.331739563
cg00003202 0.029718466
cg00003287 0.212346327
cg00007036 0.925979511
cg00007898 0.047106732
cg00008004 0.075537527
cg00008647 0.121701531
cg00009292 0.126855649
cg00011717 0.922622206
cg00014168 0.709388675
cg00015286 0.710389384
cg00016238 0.663598735
cg00017221 0.048672451
cg00017437 0.05102762
cg00021123 0.637693056
cg00021576 0.084080394

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505074_5822943019_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505074_5822943019_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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