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Sample GSM1505073 Query DataSets for GSM1505073
Status Public on Sep 17, 2014
Title SAT_120
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 39
bmi: 39.51974105
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.715077646
cg00001583 0.073695318
cg00002028 0.061793689
cg00002719 0.178122529
cg00002837 0.300520157
cg00003202 0.039627719
cg00003287 0.180894365
cg00007036 0.930701606
cg00007898 0.036850322
cg00008004 0.138988745
cg00008647 0.108326817
cg00009292 0.143880492
cg00011717 0.901183166
cg00014168 0.663794751
cg00015286 0.704163276
cg00016238 0.637087393
cg00017221 0.095847348
cg00017437 0.053946025
cg00021123 0.597122875
cg00021576 0.0887849

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505073_5822943019_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505073_5822943019_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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