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Sample GSM1505071 Query DataSets for GSM1505071
Status Public on Sep 17, 2014
Title SAT_109
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 50
bmi: 46.68029783
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.7620145
cg00001583 0.082076076
cg00002028 0.063347766
cg00002719 0.11770031
cg00002837 0.307176269
cg00003202 0.049549657
cg00003287 0.226573531
cg00007036 0.924304272
cg00007898 0.045404738
cg00008004 0.099363093
cg00008647 0.109204648
cg00009292 0.128250436
cg00011717 0.879349619
cg00014168 0.685210065
cg00015286 0.836758131
cg00016238 0.65423648
cg00017221 0.053681196
cg00017437 0.082663644
cg00021123 0.780906148
cg00021576 0.059484689

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505071_5822943015_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505071_5822943015_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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