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Sample GSM1505070 Query DataSets for GSM1505070
Status Public on Sep 17, 2014
Title SAT_89
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 31
bmi: 44.20461759
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.754119589
cg00001583 0.083395123
cg00002028 0.070658855
cg00002719 0.091947001
cg00002837 0.310647189
cg00003202 0.026192693
cg00003287 0.288437829
cg00007036 0.925126045
cg00007898 0.054880884
cg00008004 0.148135874
cg00008647 0.121082191
cg00009292 0.150899891
cg00011717 0.895043438
cg00014168 0.609442139
cg00015286 0.744730094
cg00016238 0.767784936
cg00017221 0.09317407
cg00017437 0.079812485
cg00021123 0.691838483
cg00021576 0.085480604

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505070_5822943015_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505070_5822943015_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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