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Sample GSM1505069 Query DataSets for GSM1505069
Status Public on Sep 17, 2014
Title SAT_116
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 53
bmi: 45.08521601
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.707709105
cg00001583 0.104051786
cg00002028 0.065395468
cg00002719 0.11437398
cg00002837 0.33817692
cg00003202 0.031552157
cg00003287 0.193347967
cg00007036 0.916084092
cg00007898 0.037468676
cg00008004 0.081733414
cg00008647 0.08000879
cg00009292 0.133750196
cg00011717 0.868638015
cg00014168 0.582663458
cg00015286 0.770666128
cg00016238 0.811240487
cg00017221 0.05707031
cg00017437 0.101697831
cg00021123 0.631617057
cg00021576 0.083160696

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505069_5822943014_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505069_5822943014_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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