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Sample GSM1505068 Query DataSets for GSM1505068
Status Public on Sep 17, 2014
Title SAT_86
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 50
bmi: 40.95755949
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.824274904
cg00001583 0.077850944
cg00002028 0.072459001
cg00002719 0.212297984
cg00002837 0.282274173
cg00003202 0.037228966
cg00003287 0.187345679
cg00007036 0.871653885
cg00007898 0.049042767
cg00008004 0.230231826
cg00008647 0.071100492
cg00009292 0.107195763
cg00011717 0.91677137
cg00014168 0.73955104
cg00015286 0.674828544
cg00016238 0.874802395
cg00017221 0.085468806
cg00017437 0.038469197
cg00021123 0.669002279
cg00021576 0.070056622

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505068_5822943014_R02C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505068_5822943014_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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