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Sample GSM1505067 Query DataSets for GSM1505067
Status Public on Sep 17, 2014
Title SAT_121
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 31
bmi: 37.64925239
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.901023556
cg00001583 0.11855983
cg00002028 0.06855949
cg00002719 0.283772259
cg00002837 0.341834171
cg00003202 0.022598182
cg00003287 0.224774709
cg00007036 0.949974969
cg00007898 0.013105231
cg00008004 0.205657611
cg00008647 0.066188084
cg00009292 0.152197199
cg00011717 0.89706929
cg00014168 0.746279488
cg00015286 0.777935361
cg00016238 0.772577157
cg00017221 0.093869884
cg00017437 0.060075223
cg00021123 0.759618008
cg00021576 0.073471877

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505067_5822943014_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505067_5822943014_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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