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Sample GSM1505066 Query DataSets for GSM1505066
Status Public on Sep 17, 2014
Title SAT_43
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 43.28352591
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.752069171
cg00001583 0.079017297
cg00002028 0.073083953
cg00002719 0.217176664
cg00002837 0.315324085
cg00003202 0.034300108
cg00003287 0.231766517
cg00007036 0.950822275
cg00007898 0.054702061
cg00008004 0.146741646
cg00008647 0.092422303
cg00009292 0.133273207
cg00011717 0.904059023
cg00014168 0.667117035
cg00015286 0.723159451
cg00016238 0.779331546
cg00017221 0.08366076
cg00017437 0.084565259
cg00021123 0.727123998
cg00021576 0.091312368

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505066_5822943013_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505066_5822943013_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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