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Sample GSM1505065 Query DataSets for GSM1505065
Status Public on Sep 17, 2014
Title SAT_60
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 38.1
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.780777526
cg00001583 0.081034801
cg00002028 0.082385344
cg00002719 0.270390061
cg00002837 0.318388483
cg00003202 0.025708122
cg00003287 0.232860053
cg00007036 0.936391537
cg00007898 0.043745411
cg00008004 0.146355665
cg00008647 0.095399497
cg00009292 0.156452765
cg00011717 0.900173099
cg00014168 0.637956921
cg00015286 0.704387668
cg00016238 0.87370297
cg00017221 0.081973777
cg00017437 0.066153039
cg00021123 0.631235496
cg00021576 0.092270403

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505065_5822943013_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505065_5822943013_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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