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Sample GSM1505064 Query DataSets for GSM1505064
Status Public on Sep 17, 2014
Title SAT_53
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 48
bmi: 40.58070416
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.837816962
cg00001583 0.058480583
cg00002028 0.06399056
cg00002719 0.128102259
cg00002837 0.305669519
cg00003202 0.034611807
cg00003287 0.234290346
cg00007036 0.952803898
cg00007898 0.044083106
cg00008004 0.148114315
cg00008647 0.118793383
cg00009292 0.14980878
cg00011717 0.954893302
cg00014168 0.862819777
cg00015286 0.853259672
cg00016238 0.860039362
cg00017221 0.111013117
cg00017437 0.086183039
cg00021123 0.691484409
cg00021576 0.076619204

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505064_5822791030_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505064_5822791030_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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