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Sample GSM1505063 Query DataSets for GSM1505063
Status Public on Sep 17, 2014
Title SAT_127
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 40
bmi: 41.65999039
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.881614496
cg00001583 0.065885427
cg00002028 0.087209017
cg00002719 0.128286644
cg00002837 0.283322827
cg00003202 0.028507098
cg00003287 0.205859251
cg00007036 0.953748569
cg00007898 0.0587484
cg00008004 0.16676864
cg00008647 0.160843667
cg00009292 0.167282376
cg00011717 0.923248121
cg00014168 0.784387857
cg00015286 0.739576489
cg00016238 0.692376172
cg00017221 0.093713109
cg00017437 0.091499202
cg00021123 0.647092632
cg00021576 0.040449273

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505063_5822791030_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505063_5822791030_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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