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Sample GSM1505062 Query DataSets for GSM1505062
Status Public on Sep 17, 2014
Title SAT_78
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 52
bmi: 38.61718118
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.750075326
cg00001583 0.065235403
cg00002028 0.05398195
cg00002719 0.115757529
cg00002837 0.273082372
cg00003202 0.043960397
cg00003287 0.232382534
cg00007036 0.960088971
cg00007898 0.080887629
cg00008004 0.126128684
cg00008647 0.112163315
cg00009292 0.139335668
cg00011717 0.940061051
cg00014168 0.804560584
cg00015286 0.73447087
cg00016238 0.80184088
cg00017221 0.072824399
cg00017437 0.083845734
cg00021123 0.680627944
cg00021576 0.042365979

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505062_5822791030_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505062_5822791030_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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