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Sample GSM1505061 Query DataSets for GSM1505061
Status Public on Sep 17, 2014
Title SAT_52
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 31
bmi: 63.71191136
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.84734621
cg00001583 0.051441175
cg00002028 0.084134142
cg00002719 0.108997712
cg00002837 0.30347646
cg00003202 0.039282197
cg00003287 0.260516262
cg00007036 0.921122462
cg00007898 0.06634062
cg00008004 0.11452134
cg00008647 0.089871655
cg00009292 0.151240913
cg00011717 0.937917421
cg00014168 0.841673894
cg00015286 0.84444583
cg00016238 0.74605779
cg00017221 0.090842517
cg00017437 0.065145068
cg00021123 0.697204851
cg00021576 0.043312173

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505061_5822791030_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505061_5822791030_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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