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Sample GSM1505060 Query DataSets for GSM1505060
Status Public on Sep 17, 2014
Title SAT_113
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 37.53238836
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.849192201
cg00001583 0.069297182
cg00002028 0.067995325
cg00002719 0.137198997
cg00002837 0.272944842
cg00003202 0.023968571
cg00003287 0.194389611
cg00007036 0.963700296
cg00007898 0.084044273
cg00008004 0.152371053
cg00008647 0.093739484
cg00009292 0.14785722
cg00011717 0.950896538
cg00014168 0.675057566
cg00015286 0.803210797
cg00016238 0.753844661
cg00017221 0.094820725
cg00017437 0.066618141
cg00021123 0.655316203
cg00021576 0.07671481

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505060_5822791029_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505060_5822791029_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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