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Sample GSM1505059 Query DataSets for GSM1505059
Status Public on Sep 17, 2014
Title SAT_124
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 42
bmi: 71.12115015
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.780338518
cg00001583 0.086806828
cg00002028 0.069701924
cg00002719 0.094667544
cg00002837 0.274416571
cg00003202 0.031425998
cg00003287 0.247030599
cg00007036 0.937752475
cg00007898 0.061591863
cg00008004 0.142626201
cg00008647 0.101514983
cg00009292 0.16404832
cg00011717 0.931919217
cg00014168 0.770284605
cg00015286 0.692130184
cg00016238 0.870415828
cg00017221 0.070103031
cg00017437 0.065117159
cg00021123 0.645164838
cg00021576 0.080501089

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505059_5822791029_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505059_5822791029_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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