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Sample GSM1505058 Query DataSets for GSM1505058
Status Public on Sep 17, 2014
Title SAT_71
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 45.86674136
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.784013886
cg00001583 0.082380852
cg00002028 0.064370183
cg00002719 0.111539584
cg00002837 0.299432956
cg00003202 0.029903852
cg00003287 0.272444337
cg00007036 0.953611755
cg00007898 0.062333603
cg00008004 0.136951782
cg00008647 0.107368064
cg00009292 0.138886617
cg00011717 0.92655143
cg00014168 0.695319016
cg00015286 0.774841019
cg00016238 0.873207458
cg00017221 0.070462338
cg00017437 0.060285748
cg00021123 0.581807892
cg00021576 0.051741776

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505058_5822791029_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505058_5822791029_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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