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Sample GSM1505056 Query DataSets for GSM1505056
Status Public on Sep 17, 2014
Title SAT_79
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 59.23818147
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.674996672
cg00001583 0.072633926
cg00002028 0.064750605
cg00002719 0.086086205
cg00002837 0.294467059
cg00003202 0.031856522
cg00003287 0.251288092
cg00007036 0.935408029
cg00007898 0.056277506
cg00008004 0.154887946
cg00008647 0.117137831
cg00009292 0.175156358
cg00011717 0.913033601
cg00014168 0.671275693
cg00015286 0.751703498
cg00016238 0.879036372
cg00017221 0.06245884
cg00017437 0.076642341
cg00021123 0.63055937
cg00021576 0.065120229

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505056_5822791028_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505056_5822791028_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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