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Sample GSM1505055 Query DataSets for GSM1505055
Status Public on Sep 17, 2014
Title SAT_117
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 51
bmi: 52.39151874
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.847891729
cg00001583 0.080787153
cg00002028 0.073695318
cg00002719 0.094770206
cg00002837 0.278658441
cg00003202 0.022311757
cg00003287 0.243953619
cg00007036 0.964009185
cg00007898 0.088280996
cg00008004 0.111622532
cg00008647 0.102110612
cg00009292 0.127060517
cg00011717 0.965295871
cg00014168 0.871931647
cg00015286 0.866461888
cg00016238 0.819241547
cg00017221 0.083170696
cg00017437 0.070294539
cg00021123 0.695472012
cg00021576 0.057173324

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505055_5822791027_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505055_5822791027_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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