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Sample GSM1505054 Query DataSets for GSM1505054
Status Public on Sep 17, 2014
Title SAT_125
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 45
bmi: 45.88042832
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.785618132
cg00001583 0.047683383
cg00002028 0.077872998
cg00002719 0.115514794
cg00002837 0.319820403
cg00003202 0.023291766
cg00003287 0.203781277
cg00007036 0.934050695
cg00007898 0.045104947
cg00008004 0.12947046
cg00008647 0.098431438
cg00009292 0.150713338
cg00011717 0.958402918
cg00014168 0.88506223
cg00015286 0.876069495
cg00016238 0.716377121
cg00017221 0.085836235
cg00017437 0.08891578
cg00021123 0.641042491
cg00021576 0.060001815

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505054_5822791027_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505054_5822791027_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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