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Sample GSM1505053 Query DataSets for GSM1505053
Status Public on Sep 17, 2014
Title SAT_68
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 38.37235916
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.88881196
cg00001583 0.056068203
cg00002028 0.083162272
cg00002719 0.120287052
cg00002837 0.289849511
cg00003202 0.029405465
cg00003287 0.187056339
cg00007036 0.956467681
cg00007898 0.06604899
cg00008004 0.145158901
cg00008647 0.091234337
cg00009292 0.127577905
cg00011717 0.970003469
cg00014168 0.889758696
cg00015286 0.896572656
cg00016238 0.871574505
cg00017221 0.052567166
cg00017437 0.050445602
cg00021123 0.761477717
cg00021576 0.081821281

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505053_5822791027_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505053_5822791027_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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