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Sample GSM1505052 Query DataSets for GSM1505052
Status Public on Sep 17, 2014
Title SAT_55
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 63.36188126
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.768308365
cg00001583 0.064219198
cg00002028 0.067844158
cg00002719 0.190576952
cg00002837 0.276867636
cg00003202 0.020663717
cg00003287 0.184648625
cg00007036 0.950993873
cg00007898 0.068722413
cg00008004 0.122835359
cg00008647 0.160215542
cg00009292 0.112199653
cg00011717 0.924233936
cg00014168 0.767041617
cg00015286 0.74821388
cg00016238 0.746902406
cg00017221 0.089920052
cg00017437 0.098651558
cg00021123 0.601890475
cg00021576 0.112023083

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505052_5822791026_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505052_5822791026_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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