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Sample GSM1505051 Query DataSets for GSM1505051
Status Public on Sep 17, 2014
Title SAT_131
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 54
bmi: 41.40163348
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.763225604
cg00001583 0.080012534
cg00002028 0.053521077
cg00002719 0.205023755
cg00002837 0.280216183
cg00003202 0.023432574
cg00003287 0.178601109
cg00007036 0.958788379
cg00007898 0.058949543
cg00008004 0.135336832
cg00008647 0.176438683
cg00009292 0.120121638
cg00011717 0.939648937
cg00014168 0.704296397
cg00015286 0.780901986
cg00016238 0.799470935
cg00017221 0.1065154
cg00017437 0.08464639
cg00021123 0.689826268
cg00021576 0.102027812

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505051_5822791026_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505051_5822791026_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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