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Sample GSM1505050 Query DataSets for GSM1505050
Status Public on Sep 17, 2014
Title SAT_104
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 53
bmi: 35.17637733
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.669609246
cg00001583 0.072699218
cg00002028 0.071436645
cg00002719 0.14703354
cg00002837 0.245635672
cg00003202 0.032831109
cg00003287 0.235354068
cg00007036 0.924315333
cg00007898 0.043314293
cg00008004 0.104338424
cg00008647 0.139637182
cg00009292 0.129585983
cg00011717 0.909514612
cg00014168 0.705392098
cg00015286 0.679247226
cg00016238 0.885763042
cg00017221 0.071959139
cg00017437 0.074409533
cg00021123 0.627690856
cg00021576 0.126670225

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505050_5822791026_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505050_5822791026_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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