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Sample GSM1505049 Query DataSets for GSM1505049
Status Public on Sep 17, 2014
Title SAT_123
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 42
bmi: 40.08070859
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.786889744
cg00001583 0.085375445
cg00002028 0.060925739
cg00002719 0.122751265
cg00002837 0.316712536
cg00003202 0.031828486
cg00003287 0.208864288
cg00007036 0.950923228
cg00007898 0.056244327
cg00008004 0.108600252
cg00008647 0.108072624
cg00009292 0.137961399
cg00011717 0.898832612
cg00014168 0.611792331
cg00015286 0.7364335
cg00016238 0.801993246
cg00017221 0.118265713
cg00017437 0.131033029
cg00021123 0.596027157
cg00021576 0.104731393

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505049_5822791026_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505049_5822791026_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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