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Sample GSM1505047 Query DataSets for GSM1505047
Status Public on Sep 17, 2014
Title SAT_111
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 35
bmi: 38.06228374
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.814025345
cg00001583 0.076894008
cg00002028 0.070435752
cg00002719 0.117097297
cg00002837 0.301847471
cg00003202 0.051334259
cg00003287 0.23044394
cg00007036 0.940608347
cg00007898 0.041013477
cg00008004 0.102261763
cg00008647 0.093856594
cg00009292 0.124516157
cg00011717 0.922920999
cg00014168 0.672951062
cg00015286 0.737600008
cg00016238 0.725892235
cg00017221 0.078902266
cg00017437 0.087423781
cg00021123 0.724919688
cg00021576 0.102586925

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505047_5822791024_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505047_5822791024_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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