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Sample GSM1505046 Query DataSets for GSM1505046
Status Public on Sep 17, 2014
Title SAT_45
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 40
bmi: 59.84747444
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.731539977
cg00001583 0.062997626
cg00002028 0.065419907
cg00002719 0.199748147
cg00002837 0.329338826
cg00003202 0.047227862
cg00003287 0.201598656
cg00007036 0.938199776
cg00007898 0.071960446
cg00008004 0.133222541
cg00008647 0.091772581
cg00009292 0.130316547
cg00011717 0.914407446
cg00014168 0.694847504
cg00015286 0.7596446
cg00016238 0.843239825
cg00017221 0.084097755
cg00017437 0.054436172
cg00021123 0.73938486
cg00021576 0.066167913

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505046_5822791024_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505046_5822791024_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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