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Sample GSM1505045 Query DataSets for GSM1505045
Status Public on Sep 17, 2014
Title SAT_85
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 65
bmi: 55.43186039
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.782446758
cg00001583 0.083685784
cg00002028 0.090845953
cg00002719 0.083696158
cg00002837 0.308435059
cg00003202 0.030914764
cg00003287 0.166806198
cg00007036 0.947460491
cg00007898 0.056095847
cg00008004 0.109864509
cg00008647 0.075425085
cg00009292 0.133395618
cg00011717 0.901204708
cg00014168 0.725282783
cg00015286 0.695177521
cg00016238 0.874120432
cg00017221 0.09850101
cg00017437 0.064951191
cg00021123 0.63546599
cg00021576 0.077537229

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505045_5822791024_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505045_5822791024_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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