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Sample GSM1505044 Query DataSets for GSM1505044
Status Public on Sep 17, 2014
Title SAT_66
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 29
bmi: 42.65887509
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.701001129
cg00001583 0.07214242
cg00002028 0.066801317
cg00002719 0.08898312
cg00002837 0.294769138
cg00003202 0.041356108
cg00003287 0.206525021
cg00007036 0.928033885
cg00007898 0.032989406
cg00008004 0.120820644
cg00008647 0.082937495
cg00009292 0.138197228
cg00011717 0.909978069
cg00014168 0.666560297
cg00015286 0.757201436
cg00016238 0.872698373
cg00017221 0.060464633
cg00017437 0.101420017
cg00021123 0.704281781
cg00021576 0.092485772

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505044_5822791024_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505044_5822791024_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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