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Sample GSM1505043 Query DataSets for GSM1505043
Status Public on Sep 17, 2014
Title SAT_64
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 46
bmi: 47.32657894
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.582076847
cg00001583 0.096766288
cg00002028 0.086418779
cg00002719 0.134871498
cg00002837 0.329729849
cg00003202 0.071890275
cg00003287 0.172593909
cg00007036 0.951808366
cg00007898 0.048905555
cg00008004 0.118538747
cg00008647 0.07936163
cg00009292 0.120733143
cg00011717 0.897023965
cg00014168 0.704083869
cg00015286 0.679769329
cg00016238 0.776111165
cg00017221 0.089800284
cg00017437 0.084367831
cg00021123 0.761793839
cg00021576 0.091081337

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505043_5822791024_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505043_5822791024_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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