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Sample GSM1505042 Query DataSets for GSM1505042
Status Public on Sep 17, 2014
Title SAT_122
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 28
bmi: 44.52652098
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.762216048
cg00001583 0.063557753
cg00002028 0.083871665
cg00002719 0.174325675
cg00002837 0.31292845
cg00003202 0.061544331
cg00003287 0.2033407
cg00007036 0.94618202
cg00007898 0.063510499
cg00008004 0.108383429
cg00008647 0.086752718
cg00009292 0.132533177
cg00011717 0.909652071
cg00014168 0.705061978
cg00015286 0.701095818
cg00016238 0.730882981
cg00017221 0.058592836
cg00017437 0.053282283
cg00021123 0.702958816
cg00021576 0.084875583

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505042_5822791024_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505042_5822791024_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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