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Sample GSM1505041 Query DataSets for GSM1505041
Status Public on Sep 17, 2014
Title SAT_91
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 53.55991091
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.776136898
cg00001583 0.083122133
cg00002028 0.083831522
cg00002719 0.10038573
cg00002837 0.267317653
cg00003202 0.035295737
cg00003287 0.23059995
cg00007036 0.938677301
cg00007898 0.066427443
cg00008004 0.094970842
cg00008647 0.186841579
cg00009292 0.138287116
cg00011717 0.915049219
cg00014168 0.684982132
cg00015286 0.754004437
cg00016238 0.789245068
cg00017221 0.078087723
cg00017437 0.042258408
cg00021123 0.619235425
cg00021576 0.071554689

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505041_5822791024_R02C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505041_5822791024_R02C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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