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Sample GSM1505040 Query DataSets for GSM1505040
Status Public on Sep 17, 2014
Title SAT_103
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 28
bmi: 68.67922225
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.844063787
cg00001583 0.085804235
cg00002028 0.044423253
cg00002719 0.493232821
cg00002837 0.239087566
cg00003202 0.023471204
cg00003287 0.133336734
cg00007036 0.943652147
cg00007898 0.074384416
cg00008004 0.158426058
cg00008647 0.078432282
cg00009292 0.09642411
cg00011717 0.938309254
cg00014168 0.687244137
cg00015286 0.762425318
cg00016238 0.794811522
cg00017221 0.117460961
cg00017437 0.053115386
cg00021123 0.719760593
cg00021576 0.104258883

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505040_5822791019_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505040_5822791019_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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