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Sample GSM1505039 Query DataSets for GSM1505039
Status Public on Sep 17, 2014
Title SAT_62
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 47
bmi: 35.15413737
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.807791385
cg00001583 0.058082982
cg00002028 0.068153716
cg00002719 0.337543223
cg00002837 0.556133918
cg00003202 0.046242486
cg00003287 0.201120608
cg00007036 0.941225198
cg00007898 0.055113188
cg00008004 0.155854223
cg00008647 0.06923904
cg00009292 0.132592658
cg00011717 0.913924058
cg00014168 0.737745475
cg00015286 0.818246193
cg00016238 0.691261501
cg00017221 0.07716715
cg00017437 0.054574161
cg00021123 0.628361148
cg00021576 0.063263705

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505039_5822791019_R05C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505039_5822791019_R05C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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