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Sample GSM1505038 Query DataSets for GSM1505038
Status Public on Sep 17, 2014
Title SAT_58
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 52
bmi: 69.81396877
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.754923409
cg00001583 0.13008513
cg00002028 0.058247262
cg00002719 0.203373323
cg00002837 0.326606649
cg00003202 0.029807758
cg00003287 0.175149901
cg00007036 0.924974988
cg00007898 0.051429821
cg00008004 0.101147414
cg00008647 0.082498759
cg00009292 0.133759407
cg00011717 0.904297247
cg00014168 0.683686645
cg00015286 0.791640031
cg00016238 0.819043536
cg00017221 0.094220864
cg00017437 0.081487766
cg00021123 0.636110534
cg00021576 0.049995962

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505038_5822791019_R03C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505038_5822791019_R03C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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