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Sample GSM1505037 Query DataSets for GSM1505037
Status Public on Sep 17, 2014
Title SAT_69
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 38
bmi: 53.48654287
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.796645062
cg00001583 0.075819167
cg00002028 0.075477155
cg00002719 0.138704557
cg00002837 0.325997655
cg00003202 0.028919327
cg00003287 0.287881915
cg00007036 0.94439965
cg00007898 0.058588309
cg00008004 0.099871523
cg00008647 0.056175991
cg00009292 0.146986235
cg00011717 0.900713355
cg00014168 0.698780874
cg00015286 0.758752599
cg00016238 0.834849691
cg00017221 0.084036843
cg00017437 0.051565648
cg00021123 0.608165279
cg00021576 0.067104139

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505037_5822791019_R01C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505037_5822791019_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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