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Sample GSM1505036 Query DataSets for GSM1505036
Status Public on Sep 17, 2014
Title SAT_88
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 49
bmi: 57.44348602
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.743320357
cg00001583 0.075467515
cg00002028 0.086610716
cg00002719 0.142060096
cg00002837 0.260092816
cg00003202 0.02809468
cg00003287 0.220499763
cg00007036 0.935086901
cg00007898 0.059671371
cg00008004 0.170959081
cg00008647 0.092498614
cg00009292 0.10540283
cg00011717 0.88881331
cg00014168 0.666249221
cg00015286 0.798003984
cg00016238 0.724267645
cg00017221 0.110992126
cg00017437 0.056923858
cg00021123 0.730713946
cg00021576 0.088683484

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505036_5822791018_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505036_5822791018_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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