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Sample GSM1505035 Query DataSets for GSM1505035
Status Public on Sep 17, 2014
Title SAT_99
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 49
bmi: 44.6074263
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.605627872
cg00001583 0.056387043
cg00002028 0.059112724
cg00002719 0.15098701
cg00002837 0.315649751
cg00003202 0.028892585
cg00003287 0.154552888
cg00007036 0.925830034
cg00007898 0.065557496
cg00008004 0.151760133
cg00008647 0.103270934
cg00009292 0.161302001
cg00011717 0.906344845
cg00014168 0.549690518
cg00015286 0.756649283
cg00016238 0.879210125
cg00017221 0.09205115
cg00017437 0.062271834
cg00021123 0.495653317
cg00021576 0.140751622

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505035_5822791018_R05C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505035_5822791018_R05C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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