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Sample GSM1505034 Query DataSets for GSM1505034
Status Public on Sep 17, 2014
Title SAT_84
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 40
bmi: 48.23056563
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.523474399
cg00001583 0.052642557
cg00002028 0.09404371
cg00002719 0.164531164
cg00002837 0.342262635
cg00003202 0.017981113
cg00003287 0.187331452
cg00007036 0.937341897
cg00007898 0.040657123
cg00008004 0.144658675
cg00008647 0.075977631
cg00009292 0.163567977
cg00011717 0.891327775
cg00014168 0.675316009
cg00015286 0.735682425
cg00016238 0.86909113
cg00017221 0.099445772
cg00017437 0.054342558
cg00021123 0.466685946
cg00021576 0.077508311

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505034_5822791018_R04C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505034_5822791018_R04C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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