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Sample GSM1505033 Query DataSets for GSM1505033
Status Public on Sep 17, 2014
Title SAT_95
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 64
bmi: 38.9739229
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.732863736
cg00001583 0.076649868
cg00002028 0.073614925
cg00002719 0.160725612
cg00002837 0.286844754
cg00003202 0.030742109
cg00003287 0.173564982
cg00007036 0.94708058
cg00007898 0.053524034
cg00008004 0.160708269
cg00008647 0.100838649
cg00009292 0.133312851
cg00011717 0.905905181
cg00014168 0.717011098
cg00015286 0.736899311
cg00016238 0.778297714
cg00017221 0.04878313
cg00017437 0.055453303
cg00021123 0.69381194
cg00021576 0.093861796

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505033_5822791018_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505033_5822791018_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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