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Sample GSM1505032 Query DataSets for GSM1505032
Status Public on Sep 17, 2014
Title SAT_40
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: male
subject age: 67
bmi: 49.93056432
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.612533795
cg00001583 0.082902327
cg00002028 0.0653254
cg00002719 0.180814696
cg00002837 0.274511019
cg00003202 0.023413278
cg00003287 0.199306453
cg00007036 0.954239505
cg00007898 0.051999692
cg00008004 0.155631349
cg00008647 0.112710445
cg00009292 0.138839947
cg00011717 0.907884591
cg00014168 0.620691394
cg00015286 0.724593765
cg00016238 0.863484292
cg00017221 0.081851858
cg00017437 0.07311176
cg00021123 0.643830523
cg00021576 0.08447529

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505032_5822791018_R02C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505032_5822791018_R02C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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