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Sample GSM1505031 Query DataSets for GSM1505031
Status Public on Sep 17, 2014
Title SAT_41
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 36
bmi: 46.16805171
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.765418058
cg00001583 0.101054409
cg00002028 0.084807732
cg00002719 0.208685158
cg00002837 0.291879737
cg00003202 0.028300941
cg00003287 0.184107515
cg00007036 0.931423835
cg00007898 0.027374119
cg00008004 0.127504129
cg00008647 0.219294504
cg00009292 0.137685866
cg00011717 0.891005176
cg00014168 0.635003608
cg00015286 0.817013304
cg00016238 0.862770918
cg00017221 0.058069338
cg00017437 0.118546937
cg00021123 0.57598298
cg00021576 0.085150075

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505031_5822791018_R01C02_Grn.idat.gz 4.0 Mb (ftp)(http) IDAT
GSM1505031_5822791018_R01C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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