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Sample GSM1505030 Query DataSets for GSM1505030
Status Public on Sep 17, 2014
Title SAT_115
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 54
bmi: 34.64710654
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.725903284
cg00001583 0.069754476
cg00002028 0.062638459
cg00002719 0.09932446
cg00002837 0.338216605
cg00003202 0.036035412
cg00003287 0.211155987
cg00007036 0.944026223
cg00007898 0.0457881
cg00008004 0.142381729
cg00008647 0.183153982
cg00009292 0.157306132
cg00011717 0.931221913
cg00014168 0.683771773
cg00015286 0.798332699
cg00016238 0.881271087
cg00017221 0.078066223
cg00017437 0.058293283
cg00021123 0.6173971
cg00021576 0.086781064

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505030_5822791015_R06C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505030_5822791015_R06C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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