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Sample GSM1505029 Query DataSets for GSM1505029
Status Public on Sep 17, 2014
Title SAT_110
Sample type genomic
Source name severely obese patient_Subqutaneous adipose tissue
Organism Homo sapiens
Characteristics subject status: severely obese patient
gender: female
subject age: 41
bmi: 34.80874965
tissue: Subqutaneous adipose tissue
Extracted molecule genomic DNA
Extraction protocol genomic DNA was extracted and purified from liver samples using the AllPrep DNA/RNA/Protein Mini kit (QIAgen, Hilden, Germany) according to standard instructions
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450K Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using HiScan Reader using standard recommended Illumina scanner setting
Description SAT sample of Morbidly patient
Data processing SWAN Normalization and M-value transformation, using minfi (v.1.8.9) and R (v.3.0.2)
Submission date Sep 16, 2014
Last update date Sep 17, 2014
Contact name Lude Franke
Organization name UMCG
Department Genetics
Street address Hanzeplein 1
City Groningen
State/province Please Select
ZIP/Postal code 9713 GZ
Country Netherlands
Platform ID GPL13534
Series (2)
GSE61450 Epigenome analysis of the human subqutaneous adipose tissue
GSE61454 DNA methylation from severely obese samples in liver, muscle, visceral adipose tissue and subcutaneous adipose samples

Data table header descriptions
VALUE SWAN Normalized M-value

Data table
cg00001349 0.735134154
cg00001583 0.064520028
cg00002028 0.065194574
cg00002719 0.119777908
cg00002837 0.349767951
cg00003202 0.026116278
cg00003287 0.22622367
cg00007036 0.930690226
cg00007898 0.047929869
cg00008004 0.124870743
cg00008647 0.087083389
cg00009292 0.147016126
cg00011717 0.889927108
cg00014168 0.624332428
cg00015286 0.731195474
cg00016238 0.820984419
cg00017221 0.056035167
cg00017437 0.063411025
cg00021123 0.675888648
cg00021576 0.073932249

Total number of rows: 399654

Table truncated, full table size 8943 Kbytes.

Supplementary file Size Download File type/resource
GSM1505029_5822791015_R04C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1505029_5822791015_R04C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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